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Fast Identification of Segmental Homology

FISH applies a fast dynamic programming algorithm to identify and statistically assess regions of weak ancestral similarity within and between complex genomes. It takes as input a measure of similarity among genes and the relative orders of those genes.

Authors: Peter Calabrese, Sugata Chakravarty and Todd J. Vision
Version: 1.0, Release Date: 30 June 2003

FISH is not being actively maintained.




FISH is copyright 2003, The University of North Carolina at Chapel Hill. This software is distributed in the hope that it will be useful but without any warranty whatsoever, even the implied warranty of merchantability or fitness for a particular purpose. Please read the license before proceeding. Downloading and using any files from this site implies acceptance of the terms of the license.


Development and maintenance of FISH was supported by funding from the National Science Foundation Plant Genome Research Program (DBI-0110069 and DBI-0227314 to TJV and DMS-0102008 to PPC)

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